NLOPredict
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NLOPredict

NLOPredict is a nonlinear optical prediction and data analysis tool. Currently, it is implemented as a plugin for the UCSF CHIMERA molecular modeling system. Nonlinear optical measurements can yield information about the orientation of molecules at surfaces and interfaces. Identical molecules in different orientations will result in drastically different measured nonlinear optical values. NLOPredict gives a rapid means of predicting and visualizing the nonlinear optical response in any molecular orientation. Coupling the predictive power with measurements of real samples results in a way to determine molecular orientation.

NLOPredict is a collaboration between the lab of Prof. Garth Simpson at Purdue University and the Scientific Data Analysis Lab, a Pervasive Technology Lab of Indiana University.

Chautauqua 2009

Files to download:

Installation (NEW - Feb. 2009)

We provide a compressed source file of the NLOPredict plugin for UCSF Chimera. To use it, you'll need to download/install a daily version (1.4) of Chimera. This version of Chimera will come bundled with the matplotlib plotting package.

Download one of the following and uncompress it into one of your own local directories (e.g. .../my-plugins). This will create a NLOPredict subdirectory.

  • NLOPredict.zip
  • NLOPredict.tar.gz

    Start Chimera. Go to the Favorites menu and select Preferences. Select the Tools category in the top left of the Preferences window. Click the Add button and select the directory that contains the NLOPredict directory (e.g. .../my-plugins ; not the NLOPredict directory itself). Then, you should see in the Chimera main menu: Tools -> Indiana/Purdue -> NLOPredict

    NOTE: Using the new OSX Aqua Chimera, the NLOPredict menubar will appear at the very top of the screen whenever the NLOPredict GUI was most recently given focus. (Eventually, we may display the NLOPredict menubar inside the GUI itself, as it was originally).

    Example files

    Chautauquas (workshops)


    2008